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AMRmap - is a web platform for analysis of AMR data in Russia that contains a set of tools to visualize the data on distribution of antimicrobial susceptibilities and main genetic resistance determinants in clinical microbial isolates.


Citation:


The AMRmap database accumulates the data from prospective multicenter AMR surveillance studies conducted by the Institute of Antimicrobial Chemotherapy (IAC) and the Interregional Association for Clinical Microbiology and Antimicrobial Chemotherapy (IACMAC).

Currently, the database contains information on susceptibilities of >45,000 clinical microbial isolates collected in 52 cities of Russia in 1997-2019 and tested at central laboratory of IAC.

Susceptibility categories to antimicrobial agents are determined according to current EUCAST и Russian National Clinical Recommendations on AST.




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For some antibiotics, S/I/R categorization data can be limited only to those species within the group for which the clinical breakpoints are currently established
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Press 'Display' each time you change the parameters

The number in each cell indicates the percentage of isolates that are resistant to antibiotic in a column, of the total number of isolates that are resistant to antibiotic in a row.

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The trend reflects the proportion of isolates resistant to antibiotic 2 from the total number of isolates that are resistant to antibiotic 1.

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The table shows the number and percent of isolates resistant to antibiotic 2 of the total number of isolates resistant to antibiotic 1.

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Prevalence of isolates simultaneously resistant to selected antibiotics


The antibiotic resistance (R) rules are searched for from the actual data set and selected parameters using a heuristic algorithm. The searching algorithm does not take into account any predefined rules (e.g. species-specific intrinsic resistance).
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This tab shows the total number of isolates carrying specific markers annually collected as part of prospective surveillance as well as isolates referred to the central laboratory for identification or confirmation of particular resistance genotypes.
Analysis of isolates collected in 2020 is in progress.

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This tab shows the annual prevalence of resistance markers among consecutive isolates collected as part of prospective surveillance.
Analysis of isolates collected in 2020 is in progress.

According to data from surveillance studies.


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p-value is rounded to 4 digits after decimal point
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Last data update

09.09.2021

Version

2.4, 27.07.2021

  • improved stability of sections;
  • performance enhancements.

Archive

2.3, 31.03.2021

  • data on serotypes Streptococcus pneumoniae are included;
  • design changes in the 'Markers' tab;
  • performance enhancements.

2.2, 02.03.2021

  • criteria updated EUCAST 2021 (v.11);
  • added pwa;
  • set color for each marker in the 'Markers' tab;
  • added 'screenshot' button with full screen capture;
  • added a 'notification' to update the page;
  • design changes;
  • performance enhancements.

2.1, 14.04.2020

  • criteria updated EUCAST (v.10);
  • performance enhancements.

2.0, 19.03.2019

  • option to create a set of Antibiotics to be displayed under Genetic Resistance Determinants ---> Antibiotics (all);
  • added a table in Genetic Resistance Determinants ---> Antibiotics (all);
  • added the option to search and analyze associative rules in the Associated Resistance ---> Predictions;
  • associative rules are calculated once and stored until a new database update;
  • the matrix is calculated once and stored until a new database update;
  • the 'Organisms' tab was redesigned: the option of analysis for a selected group of microorganisms was added;
  • design changes.

1.9, 12.03.2019

  • improved stability of the Comparison section;
  • added option to analyze SNP types Pseudomonas aeruginosa;
  • accelerated request API snpt.antibiotic.ru;
  • MIC trend subsection has been accelerated;
  • color stability for different SNP types.

About


Online platform for analysis of AMR data in Russia

Version

2.4 27.07.2021

Aim

Analysis and visualization of antibiotic resistance data

Coordinating organizations

  • Inter-regional Association for Clinical Microbiology and Antimicrobial Chemotherapy (IACMAC).
  • Institute of Antimicrobial Chemotherapy (IAC), Smolensk State Medical University (SSMU).

Publications

ePoster ECCMID 2017

Clinical microbiology and antimicrobial chemotherapy. – 2017. – Vol.19, №2. – P. 84-90.

Clinical microbiology and antimicrobial chemotherapy. – 2019. – Vol.21, №2. – P. 181-186.

Bulletin of Siberian Medicine. – 2020. – Vol.19, №2. – P. 163-170.

Frontiers in Microbiology. 2021; 12: 620002.

Clinical microbiology and antimicrobial chemotherapy. – 2021. – Vol.23, №2. – P. 117-123.

Contacts

Team AMRmap


The development and administration of AMRmap web platform are supported by the Inter-regional Association for Clinical Microbiology and Antimicrobial Chemotherapy (IACMAC) and Institute of Antimicrobial Chemotherapy (IAC), Smolensk State Medical University (SSMU).

The surveillance programs are supported by a group of pharmaceutical companies listed below

2018 year

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2017 year

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2016 year

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Team

Developers

Alexey Yu. Kuzmenkov, MD, PhDAuthor and Lead Developer
Deputy Director, Institute of Antimicrobial Chemotherapy (IAC)
Associate Professor at the Department of Microbiology, Smolensk State Medical University (SSMU)
Ivan V. TrushinDeveloper
Research associate, Institute of Antimicrobial Chemotherapy (IAC), Smolensk State Medical University (SSMU)
Andrey A. AvramenkoDeveloper
Research associate, Institute of Antimicrobial Chemotherapy (IAC), Smolensk State Medical University (SSMU)
Alina G. Vinogradova, MDDeveloper
Research associate, Institute of Antimicrobial Chemotherapy (IAC), Smolensk State Medical University (SSMU)

Consultants

Roman S. Kozlov, MD, MSc, DSc
Corresponding Member of the Russian Academy of Sciences (RAS)
Director, Institute of Antimicrobial Chemotherapy (IAC)
Andrey V. Dehnich, MD, PhD
Deputy Director, Institute of Antimicrobial Chemotherapy (IAC), Smolensk State Medical University (SSMU)
Mikhail V. Edelstein, PhD
Head, Laboratory of Antimicrobial Resistance, Institute of Antimicrobial Chemotherapy (IAC), Smolensk State Medical University (SSMU)

IAC IACMAC
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